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Bio-image Analysis Notebooks

Bio-image Analysis Notebooks

Trailer: Bio-image Analysis with Python
Setting up your computer
Python basics
Advanced python programming
Image analysis basics
Machine learning basics
GPU accelerated image processing
Image visualization in 3D
Image filtering
Image deconvolution
Spatial transforms
Image segmentation
Machine learning for image segmentation
Comparing segmentation algorithms
Feature extraction
Neighborhood analysis in tissues
Cell classification
Colocalization
- Counting nuclei according to expression in multiple channels
- Differentiating nuclei according to signal intensity
Graphical user interfaces
Tiled image processing
Batch processing
- How process files in a folder
- Processing timelapse data
Tabular data wrangling
Descriptive statistics
Plotting
Data visualization
Glossary
Imprint

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Neighborhood analysis in tissues

Neighborhood analysis in tissues#

See also

Spatial organization of Colon Crypts from Second Harmonic Generation (SHG) images of fibrillar collagen of mouse colons
squidpy

previous

Measuring distances between objects

next

Neighborhood definitions

By Robert Haase, Miguel Fernandes, Marcelo Leomil Zoccoler & add-your-name-here-by-sending-a-pull-request-containing-a-notebook
© Copyright 2022.